Publications

Past Publications Using ARCH Technology 
    • Weber, G., Adams, W., Bernstam, E., Bickel, J., Fox, K., Marsolo, K., Raghavan, V., Turchin, A., Zhou, X., Murphy, S. and Mandl, K. (2017). Biases introduced by filtering electronic health records for patients with “complete data”. Journal of the American Medical Informatics Association. Available from: https://academic.oup.com/jamia/article-abstract/doi/10.1093/jamia/ocx071/4057688/Biases-introduced-by-filtering-electronic-health?redirectedFrom=fulltext.
    • Gupta, S., Zabarovskaya, C., Romine, B., Vianello, D., Hudson Vitale, C. and McIntosh, L. (2017). Incorporating Data Citation in a Biomedical Repository: An Implementation Use Case. AMIA Jt Summits Transl Sci Proc.. [online] Available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543373/.
    • Klann, J., Abend, A., Raghavan, V., Mandl, K. and Murphy, S. (2016). Data interchange using i2b2. Journal of the American Medical Informatics Association, [online] 23(5), pp.909-915. Available at: https://www.ncbi.nlm.nih.gov/pubmed/26911824.
    • Geva, A., Gronsbell, J., Cai, T., Cai, T., Murphy, S., Lyons, J., Heinz, M., Natter, M., Patibandla, N., Bickel, J., Mullen, M., Mandl, K., Abman, S., Adatia, I., Austin, E., Feinstein, J., Fineman, J., Hanna, B., Hopper, R., Ivy, D., Keller, R., Krishnan, U., Kulik, T., Mullen, M., Raj, U. and Rosenzweig, E. (2017). A Computable Phenotype Improves Cohort Ascertainment in a Pediatric Pulmonary Hypertension Registry. The Journal of Pediatrics, [online] 188(5), pp.224-231.e5. Available at: https://www.ncbi.nlm.nih.gov/pubmed/28625502.
    • McMurry, A.J., Murphy, S.N., MacFadden, D., Weber, G., Simons, W.W., Orechia, J., Bickel, J., Wattanasin, N., Gilbert, C., Trevvett, P., Churchill, S., Kohane, I.S.  SHRINE: Enabling nationally scalable multi-site disease studies. PLoS One. 2013;8(3):e55811. doi: 10.1371/journal.pone.0055811. Epub 2013 Mar 7. PMID: 3591385
    • Klann, J.G., McCoy, A.B., Wright, A., Wattanasin, N., Sittig, D.F., Murphy, S.N. Health Care Transformation Through Collaboration on Open-Source Informatics Projects: Integrating a Medical Applications Platform, Research Data Repository, and Patient Summarization.  Interact J Med Res 2013;2. Doi:10.2196/ijmr.2454 PMID: 23722634.
    • Klann, J.G., Murphy, S.N.  Computing Health Quality Measures Using Informatics for Integrating Biology and the Bedside.  J Med Internet Res 2013;15. Doi:10.2196/jmir.2493  PMID: 23603227.
    • Liao, K.P., Diogo, D., Cui, J., Cai, T., Okada, Y., Gainer, V.S., Murphy, S.N., Gupta, N., Mirel, D., Ananthakrishnan, A.N., Szolovits, P., Shaw, S.Y., Raychaudhuri, S., Churchill, S., Kohane, I., Karlson, E.W., Plenge, R.M.  Association between low density lipoprotein and rheumatoid arthritis genetic factors with low density lipoprotein levels in rheumatoid arthritis and non-rheumatoid arthritis controls.  Ann Rheum Dis. 2013 May 28 (Epub ahead of print). PMID: 23716066.
    • Liao KP, Kurreeman F, Li G, Duclos G, Murphy SN, P RG, Cai T, Gupta N, Gainer V, Schur P, Cui J, Denny JC, Szolovits P, Churchill S, Kohane I, Karlson EW, Plenge RM.  Autoantibodies, autoimmune risk alleles and clinical associations in rheumatoid arthritis cases and non-RA controls in the electronic medical records.  Arthritis Rheum. 2012 Dec 10. doi: 10.1002/art.37801.
    • Ananthakrishnan AN, Gainer VS, Cai T, Perez RG, Cheng SC, Savova G, Chen P, Szolovits P, Xia Z, De Jager PL, Shaw S, Churchill S, Karlson EW, Kohane I, Perlis RH, Plenge RM, Murphy SN, Liao KP.  Similar Risk of Depression and Anxiety Following Surgery or Hospitalization for Crohn’s Disease and Ulcerative Colitis. Am J Gastroenterol. 2013 Jan 22. doi: 10.1038/ajg.2012.471.
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